Blog — High-performance computing
Paper on reproducible bioinformatics pipelines with Guix
9. Mai 2018
I’m happy to announce that the bioinformatics group at the Max Delbrück Center that I’m working with has released a preprint of a paper on reproducibility with the…
Guix welcomes Outreachy, GSoC, and Guix-HPC interns
26. April 2018
We are thrilled to announce that five people will join Guix as interns over the next few months! As part of Google’s Summer of Code (GSoC), under the umbrella…
Back from RSE 2017
11. September 2017
Last week, I was in Manchester, UK, to attend the second conference of Research Software Engineers, or RSE 2017 for short. I presented on the topic of…
Announcing Guix-HPC
5. September 2017
Today, Inria, the Max Delbrück Center for Molecular Medicine (MDC), and the Utrecht Bioinformatics Center (UBC) are announcing a joint effort to consolidate GNU Guix for reproducible scientific workflows in high-performance…
Back from BOSC 2017
25. Juli 2017
On the 23rd and 24th of July, Pjotr Prins and I visited Prague to attend BOSC 2017 , the 18th annual Bioinformatics Open Source Conference. We combined our…
Back from FOSDEM 2017
6. Februar 2017
FOSDEM 2017 concluded. This time, the GNU Guix community participated with 8 talks. An introduction to functional package management with GNU Guix …
Back from GBCUW 2016
13. September 2016
On the 12th of September, I attended the German Bioinformatics Core Unit Workshop , a satellite workshop on behalf of the German Conference on Bioinformatics (GCB) 2016. I gave…
Meet Guix at FOSDEM!
22. Januar 2016
One week to FOSDEM ! This year, there will be no less than six Guix-related talks. This and the fact that we are addressing different…
Reproducible and User-Controlled Software Environments in HPC with Guix
1. Juli 2015
Our paper entitled Reproducible and User-Controlled Software Environments in HPC with Guix was accepted for RepPar , a workshop on reproducibility in parallel computing: …