Packages — R (Page 7 of 58)

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r-english 1.2-6

Allow numbers to be presented in an English language version, one, two, three, ... Ordinals are also available, first, second, third, ... and indefinite article choice, "a" or "an". …

r-enrichplot 1.14.2

The enrichplot package implements several visualization methods for interpreting functional enrichment results obtained from ORA or GSEA analyses. All the visualization methods are developed based on ggplot2 graphics. …

r-enrichr 3.0

This package provides an R interface to all Enrichr databases, a web-based tool for analyzing gene sets and returns any enrichment of common annotated biological functions. …

r-ensdb-hsapiens-v75 2.99.0

This package exposes an annotation database generated from Ensembl. …

r-ensdb-hsapiens-v86 2.99.0

This package exposes an annotation database generated from Ensembl. …

r-ensdb-mmusculus-v79 2.99.0

This package exposes an annotation database generated from Ensembl. …

r-ensembldb 2.18.4

The package provides functions to create and use transcript-centric annotation databases/packages. The annotation for the databases are directly fetched from Ensembl using their Perl API. The functionality and data is…

r-entropy 1.3.1

This package implements various estimators of entropy, such as the shrinkage estimator by Hausser and Strimmer, the maximum likelihood and the Millow-Madow estimator, various Bayesian estimators, and the Chao-Shen estimator. It…

r-epi 2.44

This package provides functions for demographic and epidemiological analysis in the Lexis diagram, i.e. register and cohort follow-up data, in particular representation, manipulation and simulation of multistate data - the Lexis…

r-erm 1.0-2

This package provides tools to fit "Rasch models" (RM), "linear logistic test models" (LLTM), "rating scale model" (RSM), "linear rating scale models" (LRSM), "partial credit models" (PCM), and "linear partial credit models"…

r-erma 1.10.0

The epigenomics road map describes locations of epigenetic marks in DNA from a variety of cell types. Of interest are locations of histone modifications, sites of DNA methylation, and regions of…

r-esc 0.5.1

Implementation of the web-based 'Practical Meta-Analysis Effect Size Calculator' (http://www.campbellcollaboration.org/escalc/html/EffectSizeCalculator-Home.php) from David B. Wilson in R. Based on the input, the effect size can be returned as standardized mean difference, Cohen's…

r-estimability 1.3

Provides tools for determining estimability of linear functions of regression coefficients, and `epredict' methods that handle non-estimable cases correctly. …

r-etm 1.1.1

The "empirical transition matrix" (etm) package estimates the matrix of transition probabilities for any time-inhomogeneous multistate model with finite state space using the Aalen-Johansen estimator. …

r-etrunct 0.1

This package computes moments of univariate truncated T distribution. There is only one exported function, `e_trunct', which should be seen for details. …

r-europepmc 0.4.1

This package provides an R Client for the Europe PubMed Central RESTful Web Service (https://europepmc.org/RestfulWebService). It gives access to both metadata on life science literature and open access full texts. …

r-evaluate 0.15

This package provides tools that allow you to recreate the parsing, evaluation and display of R code, with enough information that you can accurately recreate what happens at the command line. …

r-exact 3.1

Performs unconditional exact tests and power calculations for 2x2 contingency tables. For comparing two independent proportions, performs Barnard's test (1945) (doi:10.1038/156177a0) using the original CSM test (Barnard (1947) (doi:10.1093/biomet/34.1-2.123)), using Fisher's p-value…

r-exactextractr 0.8.1

This package provides a replacement for the `extract' function from the `raster' package that is suitable for extracting raster values using `sf' polygons. …

r-exactranktests 0.8-34

This package computes exact conditional p-values and quantiles using an implementation of the Shift-Algorithm by Streitberg & Roehmel. …

r-excelr 0.4.0

This package provides an R interface to the jExcel library to create web-based interactive tables and spreadsheets compatible with spreadsheet software. …

r-experimenthub 2.2.1

This package provides a client for the Bioconductor ExperimentHub web resource. ExperimentHub provides a central location where curated data from experiments, publications or training courses can be accessed. Each resource has…

r-expint 0.1-7

This package provides the exponential integrals `E_1(x)', `E_2(x)', `E_n(x)' and `Ei(x)', and the incomplete gamma function `G(a, x)' defined for negative values of its first argument. The package also gives easy…

r-expm 0.999-6

This package provides tools for the computation of the matrix exponential, logarithm, square root, and related quantities. …

r-extradistr 1.9.1

This package implements density, distribution functions, quantile functions and random generation functions for a large number of univariate and multivariate distributions. …

r-extrafont 0.17

The extrafont package makes it easier to use fonts other than the basic PostScript fonts that R uses. Fonts that are imported into extrafont can be used with PDF or PostScript…

r-extrafontdb 1.0

This package holds the database for the `extrafont' package. …

r-extremes 2.1-1

ExtRemes is a suite of functions for carrying out analyses on the extreme values of a process of interest; be they block maxima over long blocks or excesses over a high threshold. …

r-eyelinker 0.2.1

Imports plain-text ASC data files from EyeLink eye trackers into (relatively) tidy data frames for analysis and visualization. …

r-ez 4.4-0

Facilitates easy analysis of factorial experiments, including purely within-Ss designs (a.k.a. "repeated measures"), purely between-Ss designs, and mixed within-and-between-Ss designs. The functions in this package aim to provide simple, intuitive and…

r-factoextra 1.0.7

This package provides some easy-to-use functions to extract and visualize the output of multivariate data analyses, including `PCA' (Principal Component Analysis), `CA' (Correspondence Analysis), `MCA' (Multiple Correspondence Analysis), `FAMD' (Factor Analysis of Mixed…

r-factominer 2.4

This package provides exploratory data analysis methods to summarize, visualize and describe datasets. The main principal component methods are available, those with the largest potential in terms of applications: principal component analysis…

r-fail 1.3

This package provides a more comfortable interface to work with R data or source files in a key-value fashion. …

r-fansi 1.0.3

This package provides counterparts to R string manipulation functions that account for the effects of ANSI text formatting control sequences. …

r-farver 2.1.0

The encoding of color can be handled in many different ways, using different color spaces. As different color spaces have different uses, efficient conversion between these representations are important. This…

r-fastcluster 1.2.3

This package implements fast hierarchical, agglomerative clustering routines. Part of the functionality is designed as drop-in replacement for existing routines: `linkage()' in the SciPy package `scipy.cluster.hierarchy', `hclust()' in R's `stats' package, and the…

r-fasterize 1.0.3

This package provides a drop-in replacement for `rasterize' from the `raster' package that takes sf-type objects, and is much faster. There is support for the main options provided by the `rasterize'…

r-fastghquad 1.0

This package implements numerically-stable Gauss-Hermite quadrature rules and utility functions for adaptive GH quadrature. …

r-fastica 1.2-3

This package provides an implementation of the FastICA algorithm to perform "independent component analysis" (ICA) and projection pursuit. …

r-fastmap 1.1.0

This package provides a fast implementation of a key-value store. Environments are commonly used as key-value stores, but every time a new key is used, it is added to R's global…

r-fastmatch 1.1-3

This package provides a fast `match' replacement for cases that require repeated look-ups. It is slightly faster that R's built-in `match' function on first match against a table, but extremely fast…

r-fastseg 1.40.0

Fastseg implements a very fast and efficient segmentation algorithm. It can segment data from DNA microarrays and data from next generation sequencing for example to detect copy number segments. Further…

r-fastshap 0.0.7

This package computes fast (relative to other implementations) approximate Shapley values for any supervised learning model. Shapley values help to explain the predictions from any black box model using ideas from…

r-fauxpas 0.5.0

This package provides HTTP error helpers. Methods are included for general purpose HTTP error handling, as well as individual methods for every HTTP status code, both via status code numbers as…

r-fcscan 1.8.0

This package is used to detect combination of genomic coordinates falling within a user defined window size along with user defined overlap between identified neighboring clusters. It can be used for…

r-fda 5.5.1

These functions were developed to support functional data analysis as described in Ramsay, J. O. and Silverman, B. W. (2005) Functional Data Analysis. The package includes data…

r-fdb-infiniummethylation-hg19 2.2.0

This is an annotation package for Illumina Infinium DNA methylation probes. It contains the compiled HumanMethylation27 and HumanMethylation450 annotations. …

r-fdrtool 1.2.17

This package provides tools to estimate tail area-based false discovery rates as well as local false discovery rates for a variety of null models (p-values, z-scores, correlation coefficients, t-scores). The proportion…

r-fds 1.8

This package contains a list of functional time series, sliced functional time series, and functional data sets. Functional time series is a special type of functional data observed over time. …

r-feather 0.3.5

Read and write feather files, a lightweight binary columnar data store designed for maximum speed. …

r-feature 1.2.15

The feature package contains functions to display and compute kernel density estimates, significant gradient and significant curvature regions. Significant gradient and/or curvature regions often correspond to significant features (e.g. local modes). …

r-ff 4.0.5

This package provides data structures that are stored on disk but behave (almost) as if they were in RAM by transparently mapping only a section in main memory. …

r-ffbase 0.13.3

This package extends the out of memory vectors of `ff' with statistical functions and other utilities to ease their usage. …

r-fftwtools 0.9-11

This package provides a wrapper for several FFTW functions. It provides access to the two-dimensional FFT, the multivariate FFT, and the one-dimensional real to complex FFT using the FFTW3 library. …

r-fgsea 1.20.0

The package implements an algorithm for fast gene set enrichment analysis. Using the fast algorithm makes more permutations and gets more fine grained p-values, which allows using accurate standard approaches to…

r-fgui 1.0-8

Rapidly create a GUI for a function you created by automatically creating widgets for arguments of the function. This package automatically parses help routines for context-sensitive help to these arguments. …

r-fhtest 1.5

This package provides functions to compare two or more survival curves with: * The Fleming-Harrington test for right-censored data based on permutations and on…

r-fields 13.3

This is a package for curve, surface and function fitting with an emphasis on splines, spatial data and spatial statistics. The major methods include cubic, and thin plate splines, Kriging, and…

r-filehash 2.4-3

This package implements a simple key-value style database where character string keys are associated with data values that are stored on the disk. A simple interface is provided for inserting, retrieving,…

r-filelock 1.0.2

This library lets you place an exclusive or shared lock on a file using the appropriate system call provided by the underlying operating system. …

r-filematrix 1.3

This package provides an interface for working with large matrices stored in files, not in computer memory. It supports multiple non-character data types (double, integer, logical and raw) of various sizes…

r-findpython 1.0.7

This package was designed to find an acceptable Python binary that matches version and feature constraints. …

r-fingerprint 3.5.7

This package provides functions to manipulate binary fingerprints of arbitrary length. A fingerprint is represented by an object of S4 class `fingerprint'. The bitwise logical functions in R are overridden so…

r-fit-models 0.64

The `fit.models' function and its associated methods (coefficients, print, summary, plot, etc.) were originally provided in the `robust' package to compare robustly and classically fitted model objects. The aim of the…

r-fitdistrplus 1.1-8

This package extends the `fitdistr' function of the MASS package with several functions to help the fit of a parametric distribution to non-censored or censored data. Censored data may contain left-censored,…

r-fithic 1.20.0

Fit-Hi-C is a tool for assigning statistical confidence estimates to intra-chromosomal contact maps produced by genome-wide genome architecture assays such as Hi-C. …

r-fivethirtyeight 0.1.0

This R package provides access to the code and data sets published by the statistics blog FiveThirtyEight. …

r-flare 1.7.0

This package provides implementations of a family of Lasso variants including Dantzig Selector, LAD Lasso, SQRT Lasso, Lq Lasso for estimating high dimensional sparse linear models. …

r-flashclust 1.01-2

This package provides a fast implementation of hierarchical clustering. …

r-flexclust 1.4-1

The main function `kcca' implements a general framework for k-centroids cluster analysis supporting arbitrary distance measures and centroid computation. Further cluster methods include hard competitive learning, neural gas, and QT clustering. There…

r-flexdashboard 0.5.2

This package provides an R Markdown format for converting an R Markdown document to a grid-oriented dashboard. The dashboard flexibly adapts the size of its components to the containing web page. …

r-flexmix 2.3-17

This package implements a general framework for finite mixtures of regression models using the EM algorithm. FlexMix provides the E-step and all data handling, while the M-step can be supplied by…

r-flexsurv 2.1

This package provides flexible parametric models for time-to-event data, including the Royston-Parmar spline model, generalized gamma and generalized F distributions. Any user-defined parametric distribution can be fitted, given at least an R…

r-flextable 0.7.0

This package provides tools to create pretty tables for HTML documents and other formats. Functions are provided to let users create tables, modify and format their content. It extends the…

r-float 0.3-0

R comes with a suite of utilities for linear algebra with "numeric" (double precision) vectors/matrices. However, sometimes single precision (or less!) is more than enough for a particular task. This…

r-flock 0.7

This package implements synchronization between R processes (spawned by using the `parallel' package for instance) using file locks. It supports both exclusive and shared locking. …

r-flowclust 3.32.0

This package provides robust model-based clustering using a t-mixture model with Box-Cox transformation. …

r-flowcore 2.6.0

This package provides S4 data structures and basic functions to deal with flow cytometry data. …

r-flowmeans 1.54.0

This package provides tools to identify cell populations in Flow Cytometry data using non-parametric clustering and segmented-regression-based change point detection. …

r-flowsom 2.2.0

FlowSOM offers visualization options for cytometry data, by using self-organizing map clustering and minimal spanning trees. …

r-flowstats 4.6.0

This package provides methods and functionality to analyze flow data that is beyond the basic infrastructure provided by the `flowCore' package. …

r-flowutils 1.58.0

This package provides utilities for flow cytometry data. …

r-flowviz 1.58.0

This package provides visualization tools for flow cytometry data. …

r-flowworkspace 4.6.0

This package is designed to facilitate comparison of automated gating methods against manual gating done in flowJo. This package allows you to import basic flowJo workspaces into BioConductor and replicate the…

r-fmcsr 1.36.0

The fmcsR package introduces an efficient "maximum common substructure" (MCS) algorithms combined with a novel matching strategy that allows for atom and/or bond mismatches in the substructures shared among two small molecules.…

r-fmsb 0.7.3

This package provides several utility functions for the book entitled "Practices of Medical and Health Data Analysis using R" (Pearson Education Japan, 2007) with Japanese demographic data and some demographic analysis related…

r-fnn 1.1.3

This package provides cover-tree and kd-tree fast k-nearest neighbor search algorithms. Related applications including KNN classification, regression and information measures are implemented. …

r-fontawesome 0.2.2

Easily and flexibly insert Font Awesome icons into R Markdown documents and Shiny apps. These icons can be inserted into HTML content through inline SVG tags or `i' tags. There…

r-fontbitstreamvera 0.1.1

This package is a placeholder for the Bitstream Vera font. It is intended for the fontquiver package. …

r-fontliberation 0.1.0

This package provides a placeholder for the Liberation fontset intended for the fontquiver package. This fontset covers the 12 combinations of families (sans, serif, mono) and faces (plain, bold, italic, bold…

r-fontquiver 0.2.1

This package provides a set of fonts. This is useful when you want to avoid system fonts to make sure your outputs are reproducible. …

r-forcats 0.5.1

This package provides helpers for reordering factor levels (including moving specified levels to front, ordering by first appearance, reversing, and randomly shuffling), and tools for modifying factor levels (including collapsing rare levels into…

r-foreach 1.5.2

This package provides support for the `foreach' looping construct. `foreach' is an idiom that allows for iterating over elements in a collection, without the use of an explicit loop counter. …

r-forecast 8.16

This package provides methods and tools for displaying and analysing univariate time series forecasts including exponential smoothing via state space models and automatic ARIMA modelling. …

r-foreign 0.8-82

This package provides functions for reading and writing data stored by some versions of Epi Info, Minitab, S, SAS, SPSS, Stata, Systat and Weka and for reading and writing some dBase files. …

r-forge 0.2.0

This package provides helper functions with a consistent interface to coerce and verify the types and shapes of values for input checking. …

r-formatr 1.12

This package provides a function to format R source code. Spaces and indent will be added to the code automatically, and comments will be preserved under certain conditions, so that R…

r-formattable 0.2.1

This R package provides functions to create formattable vectors and data frames. _Formattable_ vectors are printed with text formatting, and formattable data frames are printed with multiple types of formatting in HTML…

r-formula 1.2-4

This package provides a new class `Formula', which extends the base class `formula'. It supports extended formulas with multiple parts of regressors on the right-hand side and/or multiple responses on the…

r-fourcseq 1.24.0

This package is an R package dedicated to the analysis of (multiplexed) 4C sequencing data. `r-fourcseq' provides a pipeline to detect specific interactions between DNA elements and identify differential interactions between conditions.…

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