grit 2.0.5 Tool for integrative analysis of RNA-seq type assays
GRIT is designed to use RNA-seq, TES, and TSS data to build and quantify full length transcript models. When none of these data sources are available, GRIT can be run by providing a candidate set of TES or TSS sites. In addition, GRIT can merge in reference junctions and gene boundaries. GRIT can also be run in quantification mode, where it uses a provided GTF file and just estimates transcript expression.