Packages — R (Page 15 of 33)

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r-univoutl 0.2

This package provides well-known outlier detection techniques in the univariate case. Methods to deal with skewed distribution are included too. The Hidiroglou-Berthelot (1986) method to search for outliers in ratios…

r-untb 1.7-4

This package provides numerical simulations, and visualizations, of Hubbell's "Unified Neutral Theory of Biodiversity" (UNTB). …

r-upsetr 1.4.0

This package provides a more scalable alternative to Venn and Euler diagrams for visualizing intersecting sets. Create visualizations of intersecting sets using a novel matrix design, along with visualizations of several…

r-urca 1.3-0

This package provides unit root and cointegration tests encountered in applied econometric analysis. …

r-urltools 1.7.3

This package provides a toolkit for all URL-handling needs, including encoding and decoding, parsing, parameter extraction and modification. All functions are designed to be both fast and entirely vectorized. It…

r-useful 1.2.6

This package provides a set of little functions that have been found useful to do little odds and ends such as plotting the results of K-means clustering, substituting special text characters, viewing…

r-usethis 1.6.1

This package helps you to automate R package and project setup tasks that are otherwise performed manually. This includes setting up unit testing, test coverage, continuous integration, Git, GitHub integration, licenses,…

r-utf8 1.1.4

This package provides tools to process and print UTF-8 encoded international text (Unicode). Input, validate, normalize, encode, format, and display. …

r-uuid 0.1-4

This package provides tools for generating and handling of "Universally Unique Identifiers" (UUIDs). …

r-uwot 0.1.8

This package provides an implementation of the Uniform Manifold Approximation and Projection dimensionality reduction by McInnes et al. (2018). It also provides means to transform new data and to carry…

r-v8 3.2.0

This package provides an R interface to V8: Google's JavaScript and WebAssembly engine. …

r-valr 0.6.1

This package enables you to read and manipulate genome intervals and signals. It provides functionality similar to command-line tool suites within R, enabling interactive analysis and visualization of genome-scale data. …

r-variancepartition 1.18.3

This is a package providing tools to quantify and interpret multiple sources of biological and technical variation in gene expression experiments. It uses a linear mixed model to quantify variation in…

r-variantannotation 1.34.0

This R package can annotate variants, compute amino acid coding changes and predict coding outcomes. …

r-variantfiltering 1.24.0

Filter genetic variants using different criteria such as inheritance model, amino acid change consequence, minor allele frequencies across human populations, splice site strength, conservation, etc. …

r-varianttools 1.30.0

Explore, diagnose, and compare variant calls using filters. The VariantTools package supports a workflow for loading data, calling single sample variants and tumor-specific somatic mutations or other sample-specific variant types (e.g., RNA…

r-varselrf 0.7-8

This package provides tools for the variable selection from random forests using both backwards variable elimination (for the selection of small sets of non-redundant variables) and selection based on the importance spectrum (somewhat…

r-vbsr 0.0.5

This package provides an efficient algorithm for solving ultra-sparse regularized regression models using a variational Bayes algorithm with a spike prior. The algorithm is solved on a path, with coordinate updates,…

r-vcd 1.4-7

This package provides visualization techniques, data sets, summary and inference procedures aimed particularly at categorical data. Special emphasis is given to highly extensible grid graphics. The package was originally inspired…

r-vctrs 0.3.4

There are three main goals to the `vctrs' package: 1. To propose `vec_size()' and `vec_type()' as alternatives to `length()' and `class()'. These definitions are…

r-vegan 2.5-6

The vegan package provides tools for descriptive community ecology. It has most basic functions of diversity analysis, community ordination and dissimilarity analysis. Most of its multivariate tools can be used…

r-velocyto 0.6-1.d779034

This package provides basic routines for estimation of gene-specific transcriptional derivatives and visualization of the resulting velocity patterns. …

r-venndiagram 1.6.20

This package provides a set of functions to generate high-resolution Venn and Euler plots. It includes handling for several special cases, including two-case scaling, and extensive customization of plot shape and…

r-versions 0.3

This package allows you to install specified versions of R packages hosted on CRAN and provides functions to list available versions and the versions of currently installed packages. …

r-vgam 1.1-3

This package is an implementation of about 6 major classes of statistical regression models. Currently only fixed-effects models are implemented, i.e., no random-effects models. Many (150+) models and distributions are…

r-vim 6.0.0

This package provides tools for the visualization of missing and/or imputed values are introduced, which can be used for exploring the data and the structure of the missing and/or imputed values. …

r-vioplot 0.3.5

This package provides a violin plot, which is a combination of a box plot and a kernel density plot. …

r-vipor 0.4.5

This package provides tools to generate a violin point plot, a combination of a violin/histogram plot and a scatter plot by offsetting points within a category based on their density using quasirandom…

r-viridis 0.5.1

This package is a port of the new http://matplotlib.org/ (matplotlib) color maps (`viridis'--the default--, `magma', `plasma', and `inferno') to R. These color maps are designed in such a way that they…

r-viridislite 0.3.0

This package is a port of the new `matplotlib' color maps (`viridis', `magma', `plasma' and `inferno') to R. matplotlib is a popular plotting library for Python. These color maps are…

r-vsn 3.56.0

The package implements a method for normalising microarray intensities, and works for single- and multiple-color arrays. It can also be used for data from other technologies, as long as they have…

r-watermelon 1.32.0

The standard index of DNA methylation (beta) is computed from methylated and unmethylated signal intensities. Betas calculated from raw signal intensities perform well, but using 11 methylomic datasets we demonstrate that…

r-wavcluster 2.22.0

This package provides an integrated pipeline for the analysis of PAR-CLIP data. PAR-CLIP-induced transitions are first discriminated from sequencing errors, SNPs and additional non-experimental sources by a non- parametric mixture model. The protein…

r-waveslim 1.8.2

This package provides basic wavelet routines for time series (1D), image (2D) and array (3D) analysis. The code provided here is based on wavelet methodology developed in Percival and Walden (2000);…

r-wavetiling 1.28.0

This package is designed to conduct transcriptome analysis for tiling arrays based on fast wavelet-based functional models. …

r-wdman 0.2.5

There are a number of binary files associated with the Webdriver/Selenium project (see `http://www.seleniumhq.org/download/', `https://sites.google.com/a/chromium.org/chromedriver/', `https://github.com/mozilla/geckodriver', `http://phantomjs.org/download.html', and `https://github.com/SeleniumHQ/selenium/wiki/InternetExplorerDriver' for more information). This package provides functions to download these binaries and to manage processes involving…

r-webbioc 1.60.0

This package provides an integrated web interface for doing microarray analysis using several of the Bioconductor packages. It is intended to be deployed as a centralized bioinformatics resource for use by…

r-webshot 0.5.2

Webshot makes it easy to take screenshots of web pages from within R. It can also run Shiny applications locally and take screenshots of the application; and it can render and…

r-weights 1.0.1

This package Provides a variety of functions for producing simple weighted statistics, such as weighted Pearson's correlations, partial correlations, Chi-Squared statistics, histograms, and t-tests. Also now includes some software for quickly recoding…

r-wgaim 2.0-1

This package integrates sophisticated mixed modelling methods with a whole genome approach to detecting significant QTL in linkage maps. …

r-wgcna 1.69

This package provides functions necessary to perform Weighted Correlation Network Analysis on high-dimensional data. It includes functions for rudimentary data cleaning, construction and summarization of correlation networks, module identification and functions for…

r-whisker 0.4

This package provides logicless templating, with a syntax that is not limited to R. …

r-widgettools 1.66.0

This package contains tools to support the construction of tcltk widgets in R. …

r-wiggleplotr 1.12.1

This package provides tools to visualize read coverage from sequencing experiments together with genomic annotations (genes, transcripts, peaks). Introns of long transcripts can be rescaled to a fixed length for better visualization of…

r-withr 2.2.0

This package provides a set of functions to run R code in an environment in which global state has been temporarily modified. Many of these functions were originally a part of…

r-wmtsa 2.0-3

This package provides software to accompany the book "Wavelet Methods for Time Series Analysis", Donald B. Percival and Andrew T. Walden, Cambridge University Press, 2000. …

r-wordcloud 2.6

This package provides functionality to create pretty word clouds, visualize differences and similarity between documents, and avoid over-plotting in scatter plots with text. …

r-workflows 0.1.3

A workflow is an object that can bundle together your pre-processing, modeling, and post-processing requests. For example, if you have a `recipe' and `parsnip' model, these can be combined into a…

r-wrench 1.6.0

Wrench is a package for normalization sparse genomic count data, like that arising from 16s metagenomic surveys. …

r-writexl 1.3.1

This package provides a data frame to xlsx exporter based on libxlsxwriter. …

r-xbioc 0.1.16-1.6ff0670

This package provides extra utility functions to perform common tasks in the analysis of omics data, leveraging and enhancing features provided by Bioconductor packages. …

r-xbseq 1.20.0

XBSeq is a novel algorithm for testing RNA-seq "differential expression" (DE), where a statistical model was established based on the assumption that observed signals are the convolution of true expression signals and…

r-xcms 3.10.1

This package provides a framework for processing and visualization of chromatographically separated and single-spectra mass spectral data. It imports from AIA/ANDI NetCDF, mzXML, mzData and mzML files. It preprocesses data…

r-xfun 0.17

This package provides miscellaneous functions commonly used in other packages maintained by Yihui Xie. …

r-xgboost 1.2.0.1

This package provides an R interface to Extreme Gradient Boosting, which is an efficient implementation of the gradient boosting framework from Chen and Guestrin (2016). The package includes efficient linear model…

r-xkcd 0.0.6

This package provides the means to plot ggplot2 graphs in the style of the XKCD web comic. …

r-xmisc 0.2.1

This package provides Xiaobei's miscellaneous classes and functions, which are useful when developing R packages for "object oriented programming" (OOP) using R Reference Class. …

r-xml 3.99-0.5

Many approaches for both reading and creating XML (and HTML) documents (including DTDs), both local and accessible via HTTP or FTP. Also offers access to an XPath "interpreter". …

r-xml2 1.3.2

This package provides a simple, consistent interface to working with XML files in R. It is built on top of the libxml2 C library. …

r-xmlparsedata 1.0.4

This package provides tools to convert the output of `utils::getParseData()' to an `XML' tree, that one can search via `XPath', and is easier to manipulate in general. …

r-xnomial 1.0.4

This package provides an exact Goodness-of-Fit test for multinomial data with fixed probabilities. It can be used to determine whether a set of counts fits a given expected ratio. To…

r-xopen 1.0.0

This package provides a cross-platform solution to open files, directories or URLs with their associated programs. …

r-xtable 1.8-4

This package provides tools to export R data as LaTeX and HTML tables. …

r-xts 0.12.1

This package provides for uniform handling of R's different time-based data classes by extending `zoo', maximizing native format information preservation and allowing for user-level customization and extension, while simplifying cross-class interoperability. …

r-xvector 0.28.0

This package provides memory efficient S4 classes for storing sequences "externally" (behind an R external pointer, or on disk). …

r-xyz 0.2

High dimensional interaction search by brute force requires a quadratic computational cost in the number of variables. The xyz algorithm provably finds strong interactions in almost linear time. For details…

r-yaml 2.2.1

This package implements the libyaml YAML 1.1 parser and emitter (http://pyyaml.org/wiki/LibYAML) for R. …

r-yamss 1.14.0

This package provides tools to analyze and visualize high-throughput metabolomics data acquired using chromatography-mass spectrometry. These tools preprocess data in a way that enables reliable and powerful differential analysis. …

r-yapsa 1.14.0

This package provides functions and routines useful in the analysis of somatic signatures (cf. L. Alexandrov et al., Nature 2013). In particular, functions to perform a signature analysis with…

r-yaqcaffy 1.48.0

This is a package that can be used for quality control of Affymetrix GeneChip expression data and reproducibility analysis of human whole genome chips with the MAQC reference datasets. …

r-yardstick 0.0.7

This package provides tidy tools for quantifying how well a model fits to a data set such as confusion matrices, class probability curve summaries, and regression metrics (e.g., RMSE). …

r-yarn 1.14.0

Expedite large RNA-Seq analyses using a combination of previously developed tools. YARN is meant to make it easier for the user in performing basic mis-annotation quality control, filtering, and condition-aware normalization. YARN…

r-zeallot 0.1.0

This package provides a `%<-%' operator to perform multiple, unpacking, and destructuring assignment in R. The operator unpacks the right-hand side of an assignment into multiple values and assigns these values…

r-zfpkm 1.10.0

This is a package to perform the zFPKM transform on RNA-seq FPKM data. This algorithm is based on the publication by Hart et al., 2013 (Pubmed ID 24215113). …

r-zim 1.1.0

Analyze count time series with excess zeros. Two types of statistical models are supported: Markov regression and state-space models. They are also known as observation-driven and parameter-driven models respectively in…

r-zip 2.1.1

This package provides a cross-platform Zip compression library for R. It is a replacement for the `zip' function, that does not require any additional external tools on any platform. …

r-zlibbioc 1.34.0

This package uses the source code of zlib-1.2.5 to create libraries for systems that do not have these available via other means. …

r-zoo 1.8-8

This package contains an S3 class with methods for totally ordered indexed observations. It is particularly aimed at irregular time series of numeric vectors/matrices and factors. …

r-zseq 0.2.0

This package generates well-known integer sequences. The `gmp' package is adopted for computing with arbitrarily large numbers. Every function has a hyperlink to its corresponding item in the "On-Line Encyclopedia…

r-ztable 0.2.0

This package provides functions to make zebra-striped tables (tables with alternating row colors) in LaTeX and HTML formats easily from `data.frame', `matrix', `lm', `aov', `anova', `glm', `coxph', `nls', `fitdistr', `mytable' and `cbind.mytable' objects. …

r-ztype 0.1.0

How fast can you type R functions on your keyboard? Find out by running a `zty.pe' game: export R functions as instructions to type to destroy opponents' vessels. …

r-zvcv 2.1.0

"Zero-variance control variates" (ZV-CV) is a post-processing method to reduce the variance of Monte Carlo estimators of expectations using the derivatives of the log target. Once the derivatives are available, the…

r-zyp 0.10-1.1

This package contains an efficient implementation of Sen's slope method (Sen, 1968) plus implementation of Xuebin Zhang's (Zhang, 1999) and Yue-Pilon's (Yue, 2002) pre-whitening approaches to determining trends in climate data. …

racket 7.8

Racket is an implementation of the Scheme programming language (R5RS and R6RS) and related languages, such as Typed Racket. It features a compiler and a virtual machine with just-in-time native compilation,…

racket-minimal 7.8

Racket is an implementation of the Scheme programming language (R5RS and R6RS) and related languages, such as Typed Racket. It features a compiler and a virtual machine with just-in-time native compilation,…

radare2 4.4.0

Radare2 is a complete framework for reverse-engineering, debugging, and analyzing binaries. It is composed of a set of small utilities that can be used together or independently from the command line. Radare2…

radeontop 1.2

RadeonTop monitors resource consumption on supported AMD Radeon Graphics Processing Units (GPUs), either in real time as bar graphs on a terminal or saved to a file for further processing. It…

radicale 3.0.4

Radicale is a CalDAV and CardDAV server for UNIX-like platforms. Calendars and address books are available for both local and remote access, possibly limited through authentication policies. They can be…

rage 0.3.1

Rage is a video and audio player written with Enlightenment Foundation Libraries with some extra bells and whistles. …

ragel 6.10

Ragel compiles executable finite state machines from regular languages. Ragel targets C, C++, Obj-C, C#, D, Java, Go and Ruby. Ragel state machines can not only recognize byte sequences as…

raincat 1.2.1

Project Raincat is a game developed by Carnegie Mellon students through GCS during the Fall 2008 semester. Raincat features game play inspired from classics Lemmings and The Incredible Machine. The…

rakarrack 0.6.1

Rakarrack is a richly featured multi-effects processor emulating a guitar effects pedalboard. Effects include compressor, expander, noise gate, equalizers, exciter, flangers, chorus, various delay and reverb effects, distortion modules and many more.…

rakudo 2019.03.1

Rakudo Perl is a compiler that implements the Perl 6 specification and runs on top of several virtual machines. …

randomjungle 2.1.0

Random Jungle is an implementation of Random Forests. It is supposed to analyse high dimensional data. In genetics, it can be used for analysing big Genome Wide Association (GWA) data.…

ranger 1.9.3

ranger is a console file manager with Vi key bindings. It provides a minimalistic and nice curses interface with a view on the directory hierarchy. It ships with `rifle', a file…

rapicorn 16.0.0

Rapicorn is a toolkit for rapid development of user interfaces in C++ and Python. The user interface is designed in a declarative markup language and is connected to the programming logic…

rapid-photo-downloader 0.9.18

Import photos and videos from cameras, phones and memory cards and generate meaningful file and folder names. …

rapidjson 1.1.0

RapidJSON is a fast JSON parser/generator for C++ with both SAX/DOM style API. …

raptor2 2.0.15

Raptor is a C library providing a set of parsers and serialisers that generate Resource Description Framework (RDF) triples by parsing syntaxes or serialise the triples into a syntax. The supported…

rasqal 0.9.33

Rasqal is a C library that handles Resource Description Framework (RDF) query language syntaxes, query construction and execution of queries returning results as bindings, boolean, RDF graphs/triples or syntaxes. The supported…

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