Today, Inria, the Max Delbrück Center for Molecular Medicine (MDC), and the Utrecht Bioinformatics Center (UBC) are announcing a joint effort to consolidate GNU Guix for reproducible scientific workflows in high-performance computing (HPC). The three research institutes have been using Guix and contributing to it. The new effort, dubbed Guix-HPC, hopes to extend Guix functionality to better address the needs of HPC users, as well as augmenting its package collection.
Guix was not initially designed with HPC in mind. However, we believe it has many good properties both for flexible software deployment on clusters, and as a foundation for reproducible scientific workflows. The Guix-HPC blog will regularly feature articles with HPC “howtos” and stories about our achievements. We are thrilled by the opportunities this new effort offers!
To learn more, visit the Guix-HPC Web site.
About GNU Guix
GNU Guix is a transactional package manager for the GNU system. The Guix System Distribution or GuixSD is an advanced distribution of the GNU system that relies on GNU Guix and respects the user's freedom.
In addition to standard package management features, Guix supports transactional upgrades and roll-backs, unprivileged package management, per-user profiles, and garbage collection. Guix uses low-level mechanisms from the Nix package manager, except that packages are defined as native Guile modules, using extensions to the Scheme language. GuixSD offers a declarative approach to operating system configuration management, and is highly customizable and hackable.
GuixSD can be used on an i686 or x86_64 machine. It is also possible to use Guix on top of an already installed GNU/Linux system, including on mips64el, armv7, and aarch64.
Похожие темы:Bioinformatics High-performance computing Reproducibility Research
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