Packages — R (Page 21 of 61)

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r-vim 6.2.2

This package provides tools for the visualization of missing and/or imputed values are introduced, which can be used for exploring the data and the structure of the missing and/or imputed values. …

r-vioplot 0.3.7

This package provides a violin plot, which is a combination of a box plot and a kernel density plot. …

r-vipor 0.4.5

This package provides tools to generate a violin point plot, a combination of a violin/histogram plot and a scatter plot by offsetting points within a category based on their density using quasirandom…

r-viridis 0.6.2

This package is a port of the new http://matplotlib.org/ (matplotlib) color maps (`viridis'--the default--, `magma', `plasma', and `inferno') to R. These color maps are designed in such a way that they…

r-viridislite 0.4.1

This package is a port of the new `matplotlib' color maps (`viridis', `magma', `plasma' and `inferno') to R. matplotlib is a popular plotting library for Python. These color maps are…

r-visdat 0.5.3

This package provides procedures to create preliminary exploratory data visualisations of an entire dataset to identify problems or unexpected features using `ggplot2'. …

r-vroom 1.5.7

This package reads and writes data files like CSV, TSV and FWF. When reading it uses a quick initial indexing step, then reads the values lazily, so only the data you…

r-vsn 3.64.0

The package implements a method for normalising microarray intensities, and works for single- and multiple-color arrays. It can also be used for data from other technologies, as long as they have…

r-waldo 0.4.0

Compare complex R objects and reveal the key differences. This package was designed particularly for use in testing packages where being able to quickly isolate key differences makes understanding test failures…

r-warp 0.2.0

This package provides tooling to group dates by a variety of periods including: yearly, monthly, by second, by week of the month, and more. The groups are defined in such a…

r-watermelon 2.2.0

The standard index of DNA methylation (beta) is computed from methylated and unmethylated signal intensities. Betas calculated from raw signal intensities perform well, but using 11 methylomic datasets we demonstrate that…

r-wavcluster 2.30.0

This package provides an integrated pipeline for the analysis of PAR-CLIP data. PAR-CLIP-induced transitions are first discriminated from sequencing errors, SNPs and additional non-experimental sources by a non- parametric mixture model. The protein…

r-waveslim 1.8.4

This package provides basic wavelet routines for time series (1D), image (2D) and array (3D) analysis. The code provided here is based on wavelet methodology developed in Percival and Walden (2000);…

r-wavetiling 1.28.0

This package is designed to conduct transcriptome analysis for tiling arrays based on fast wavelet-based functional models. …

r-wdman 0.2.6

There are a number of binary files associated with the Webdriver/Selenium project (see `http://www.seleniumhq.org/download/', `https://sites.google.com/a/chromium.org/chromedriver/', `https://github.com/mozilla/geckodriver', `http://phantomjs.org/download.html', and `https://github.com/SeleniumHQ/selenium/wiki/InternetExplorerDriver' for more information). This package provides functions to download these binaries and to manage processes involving…

r-webbioc 1.68.0

This package provides an integrated web interface for doing microarray analysis using several of the Bioconductor packages. It is intended to be deployed as a centralized bioinformatics resource for use by…

r-webmockr 0.8.2

This is a package for stubbing and setting expectations on HTTP requests. It includes tools for stubbing HTTP requests, including expected request conditions and response conditions. You can match on…

r-webshot 0.5.3

Webshot makes it easy to take screenshots of web pages from within R. It can also run Shiny applications locally and take screenshots of the application; and it can render and…

r-webutils 1.1

This package parses HTTP request data in `application/json', `multipart/form-data', or `application/x-www-form-urlencoded' format. It includes an example of hosting and parsing HTML form data in R using either `httpuv' or `Rhttpd'. …

r-weights 1.0.4

This package Provides a variety of functions for producing simple weighted statistics, such as weighted Pearson's correlations, partial correlations, Chi-Squared statistics, histograms, and t-tests. Also now includes some software for quickly recoding…

r-wesanderson 0.3.6

This package provides color palettes that have been generated mostly from Wes Anderson movies. …

r-wgaim 2.0-1

This package integrates sophisticated mixed modelling methods with a whole genome approach to detecting significant QTL in linkage maps. …

r-wgcna 1.71

This package provides functions necessary to perform Weighted Correlation Network Analysis on high-dimensional data. It includes functions for rudimentary data cleaning, construction and summarization of correlation networks, module identification and functions for…

r-whisker 0.4

This package provides logicless templating, with a syntax that is not limited to R. …

r-widgettools 1.74.0

This package contains tools to support the construction of tcltk widgets in R. …

r-wiggleplotr 1.20.0

This package provides tools to visualize read coverage from sequencing experiments together with genomic annotations (genes, transcripts, peaks). Introns of long transcripts can be rescaled to a fixed length for better visualization of…

r-withr 2.5.0

This package provides a set of functions to run R code in an environment in which global state has been temporarily modified. Many of these functions were originally a part of…

r-wk 0.6.0

This package provides a minimal R and C++ API for parsing well-known binary and well-known text representation of geometries to and from R-native formats. Well-known binary is compact and fast to parse;…

r-wmtsa 2.0-3

This package provides software to accompany the book "Wavelet Methods for Time Series Analysis", Donald B. Percival and Andrew T. Walden, Cambridge University Press, 2000. …

r-wordcloud 2.6

This package provides functionality to create pretty word clouds, visualize differences and similarity between documents, and avoid over-plotting in scatter plots with text. …

r-wordspace 0.2-8

The wordspace package turns R into an interactive laboratory for empirical research on "distributional semantic models" (DSM). It consists of a small set of carefully designed functions, most of which …

r-workflows 1.0.0

A workflow is an object that can bundle together your pre-processing, modeling, and post-processing requests. For example, if you have a `recipe' and `parsnip' model, these can be combined into a…

r-workflowsets 1.0.0

A workflow is a combination of a model and preprocessors (e.g, a formula, recipe, etc.). In order to try different combinations of these, an object can be created that contains many…

r-wppi 1.4.0

This package predicts functional relevance of protein-protein interactions based on functional annotations such as Human Protein Ontology and Gene Ontology, and prioritizes genes based on network topology, functional scores and a path…

r-wrench 1.14.0

Wrench is a package for normalization sparse genomic count data, like that arising from 16s metagenomic surveys. …

r-writexl 1.4.0

This package provides a data frame to xlsx exporter based on libxlsxwriter. …

r-xbioc 0.1.16-1.6ff0670

This package provides extra utility functions to perform common tasks in the analysis of omics data, leveraging and enhancing features provided by Bioconductor packages. …

r-xbseq 1.22.0

XBSeq is a novel algorithm for testing RNA-seq "differential expression" (DE), where a statistical model was established based on the assumption that observed signals are the convolution of true expression signals and…

r-xcir 1.8.0-1.3b59d45

This package is an R package that offers models and tools for subject level analysis of "X chromosome inactivation" (XCI) and XCI-escape inference. …

r-xcms 3.18.0

This package provides a framework for processing and visualization of chromatographically separated and single-spectra mass spectral data. It imports from AIA/ANDI NetCDF, mzXML, mzData and mzML files. It preprocesses data…

r-xfun 0.33

This package provides miscellaneous functions commonly used in other packages maintained by Yihui Xie. …

r-xgboost 1.6.0.1

This package provides an R interface to Extreme Gradient Boosting, which is an efficient implementation of the gradient boosting framework from Chen and Guestrin (2016). The package includes efficient linear model…

r-xina 1.14.0

The aim of `XINA' is to determine which proteins exhibit similar patterns within and across experimental conditions, since proteins with co-abundance patterns may have common molecular functions. `XINA' imports multiple datasets,…

r-xkcd 0.0.6

This package provides the means to plot ggplot2 graphs in the style of the XKCD web comic. …

r-xmapbridge 1.54.0

The package `xmapbridge' can plot graphs in the X:Map genome browser. X:Map uses the Google Maps API to provide a scrollable view of the genome. It supports a number of…

r-xmisc 0.2.1

This package provides Xiaobei's miscellaneous classes and functions, which are useful when developing R packages for "object oriented programming" (OOP) using R Reference Class. …

r-xml 3.99-0.10

Many approaches for both reading and creating XML (and HTML) documents (including DTDs), both local and accessible via HTTP or FTP. Also offers access to an XPath "interpreter". …

r-xml2 1.3.3

This package provides a simple, consistent interface to working with XML files in R. It is built on top of the libxml2 C library. …

r-xmlparsedata 1.0.5

This package provides tools to convert the output of `utils::getParseData()' to an `XML' tree, that one can search via `XPath', and is easier to manipulate in general. …

r-xnomial 1.0.4

This package provides an exact Goodness-of-Fit test for multinomial data with fixed probabilities. It can be used to determine whether a set of counts fits a given expected ratio. To…

r-xopen 1.0.0

This package provides a cross-platform solution to open files, directories or URLs with their associated programs. …

r-xtable 1.8-4

This package provides tools to export R data as LaTeX and HTML tables. …

r-xts 0.12.1

This package provides for uniform handling of R's different time-based data classes by extending `zoo', maximizing native format information preservation and allowing for user-level customization and extension, while simplifying cross-class interoperability. …

r-xvector 0.36.0

This package provides memory efficient S4 classes for storing sequences "externally" (behind an R external pointer, or on disk). …

r-xyz 0.2

High dimensional interaction search by brute force requires a quadratic computational cost in the number of variables. The xyz algorithm provably finds strong interactions in almost linear time. For details…

r-yaml 2.3.5

This package implements the libyaml YAML 1.1 parser and emitter (http://pyyaml.org/wiki/LibYAML) for R. …

r-yamss 1.22.0

This package provides tools to analyze and visualize high-throughput metabolomics data acquired using chromatography-mass spectrometry. These tools preprocess data in a way that enables reliable and powerful differential analysis. …

r-yapsa 1.22.0

This package provides functions and routines useful in the analysis of somatic signatures (cf. L. Alexandrov et al., Nature 2013). In particular, functions to perform a signature analysis with…

r-yaqcaffy 1.50.0

This is a package that can be used for quality control of Affymetrix GeneChip expression data and reproducibility analysis of human whole genome chips with the MAQC reference datasets. …

r-yardstick 1.1.0

This package provides tidy tools for quantifying how well a model fits to a data set such as confusion matrices, class probability curve summaries, and regression metrics (e.g., RMSE). …

r-yarn 1.22.0

Expedite large RNA-Seq analyses using a combination of previously developed tools. YARN is meant to make it easier for the user in performing basic mis-annotation quality control, filtering, and condition-aware normalization. YARN…

r-yulab-utils 0.0.5

Miscellaneous functions commonly used by YuLab-SMU, such as `install_zip_gh' to install R packages from Github ZIP files. …

r-zeallot 0.1.0

This package provides a `%<-%' operator to perform multiple, unpacking, and destructuring assignment in R. The operator unpacks the right-hand side of an assignment into multiple values and assigns these values…

r-zellkonverter 1.6.5

This package provides methods to convert between Python AnnData objects and SingleCellExperiment objects. These are primarily intended for use by downstream Bioconductor packages that wrap Python methods for single-cell data analysis. …

r-zfpkm 1.18.0

This is a package to perform the zFPKM transform on RNA-seq FPKM data. This algorithm is based on the publication by Hart et al., 2013 (Pubmed ID 24215113). …

r-zim 1.1.0

Analyze count time series with excess zeros. Two types of statistical models are supported: Markov regression and state-space models. They are also known as observation-driven and parameter-driven models respectively in…

r-zinbwave 1.18.0

This package implements a general and flexible zero-inflated negative binomial model that can be used to provide a low-dimensional representations of single-cell RNA-seq data. The model accounts for zero inflation (dropouts), over-dispersion,…

r-zip 2.2.1

This package provides a cross-platform Zip compression library for R. It is a replacement for the `zip' function, that does not require any additional external tools on any platform. …

r-zlibbioc 1.42.0

This package uses the source code of zlib-1.2.5 to create libraries for systems that do not have these available via other means. …

r-zlog 1.0.0

The `zlog' package offers functions to transform laboratory measurements into standardised z or z(log)-values. Therefore the lower and upper reference limits are needed. If these are not known they could…

r-zoeppritz 1.0-8

The `r-zoeppritz' package calculates and plots scattering matrix coefficients or scattering amplitudes, for seismological P and S-waves at an interface. …

r-zoib 1.5.5

This package lets you fit beta regression and zero-or-one inflated beta regression and obtain Bayesian inference of the model via the Markov Chain Monte Carlo approach implemented in JAGS. …

r-zoltr 0.5.1

Zoltar is a website that provides a repository of model forecast results in a standardized format and a central location. It supports storing, retrieving, comparing, and analyzing time series forecasts for…

r-zonator 0.6.0

Create new analysis setups and deal with results of Zonation conservation prioritization software. …

r-zonebuilder 0.0.2

This package provides functions, documentation and example data to help divide geographic space into discrete polygons (zones). The functions are motivated by research into the merits of different zoning systems. …

r-zoo 1.8-11

This package contains an S3 class with methods for totally ordered indexed observations. It is particularly aimed at irregular time series of numeric vectors/matrices and factors. …

r-zooarch 1.2

The analysis and inference of faunal remains recovered from archaeological sites concerns the field of zooarchaeology. The zooaRch package provides analytical tools to make inferences on zooarchaeological data. Functions in…

r-zooimage 5.5.2

This package provides a solution for analyzing digital images of plankton. In combination with ImageJ, an image analysis system, it processes digital images, measures individuals, trains for automatic classification of taxa,…

r-zoolog 1.1.0

This package includes functions and reference data to generate and manipulate log-ratios (also known as "log size index" (LSI) values) from measurements obtained on zooarchaeological material. Log ratios are used to…

r-zoom 2.0.6

This package provides `zm', a utility that allows you to zoom/navigate any plot when called with any active plot. …

r-zoomgroupstats 0.1.0

This package provides utilities for processing and analyzing the files that are exported from a recorded Zoom meeting. This includes analyzing data captured through video cameras and microphones, the text-based chat,…

r-zoon 0.6.5

This package reads user submitted modules from an online repository, runs full species distribution modelling workflows and returns output that is fully reproducible. …

r-zra 0.2

This package combines a forecast of a time series, using the function `forecast', with the dynamic plots from `dygraphs'. …

r-zscorer 0.3.1

This package provides a tool for calculating z-scores and centiles for weight-for-age, length/height-for-age, weight-for-length/height, BMI-for-age, head circumference-for-age, age circumference-for-age, subscapular skinfold-for-age, triceps skinfold-for-age based on the WHO Child Growth Standards. …

r-zseq 0.2.1

This package generates well-known integer sequences. The `gmp' package is adopted for computing with arbitrarily large numbers. Every function has a hyperlink to its corresponding item in the "On-Line Encyclopedia…

r-ztable 0.2.3

This package provides functions to make zebra-striped tables (tables with alternating row colors) in LaTeX and HTML formats easily from `data.frame', `matrix', `lm', `aov', `anova', `glm', `coxph', `nls', `fitdistr', `mytable' and `cbind.mytable' objects. …

r-ztpln 0.1.2

This package provides functions for obtaining the density, random variates and maximum likelihood estimates of the Zero-truncated Poisson lognormal distribution and their mixture distribution. …

r-ztree 1.0.7

This package provides tools for reading `.xls' and `.sbj' files which are written by the proprietary program z-Tree for developing and carrying out economic experiments. …

r-ztype 0.1.0

How fast can you type R functions on your keyboard? Find out by running a `zty.pe' game: export R functions as instructions to type to destroy opponents' vessels. …

r-zvcv 2.1.1

"Zero-variance control variates" (ZV-CV) is a post-processing method to reduce the variance of Monte Carlo estimators of expectations using the derivatives of the log target. Once the derivatives are available, the…

r-zyp 0.10-1.1

This package contains an efficient implementation of Sen's slope method (Sen, 1968) plus implementation of Xuebin Zhang's (Zhang, 1999) and Yue-Pilon's (Yue, 2002) pre-whitening approaches to determining trends in climate data. …

r-zzlite 0.1.2

This package provides a minor collection of HTTP wrappers for the Zamzar file conversion API. The wrappers makes it easy to utilize the API and thus convert between more than 100…

racket 8.6

Racket is a general-purpose programming language in the Scheme family, with a large set of libraries and a compiler based on Chez Scheme. Racket is also a platform for language-oriented programming,…

racket-minimal 8.6

Racket is a general-purpose programming language in the Scheme family, with a large set of libraries and a compiler based on Chez Scheme. Racket is also a platform for language-oriented programming,…

radare2 5.1.1

Radare2 is a complete framework for reverse-engineering, debugging, and analyzing binaries. It is composed of a set of small utilities that can be used together or independently from the command line. Radare2…

radare2 5.0.0

Radare2 is a complete framework for reverse-engineering, debugging, and analyzing binaries. It is composed of a set of small utilities that can be used together or independently from the command line. Radare2…

radeontop 1.4

RadeonTop monitors resource consumption on supported AMD Radeon Graphics Processing Units (GPUs), either in real time as bar graphs on a terminal or saved to a file for further processing. It…

radicale 3.1.7

Radicale is a CalDAV and CardDAV server for UNIX-like platforms. Calendars and address books are available for both local and remote access, possibly limited through authentication policies. They can be…

radvd 2.19

The Router Advertisement Daemon (radvd) is run on systems acting as IPv6 routers. It sends Router Advertisement messages specified by RFC 2461 periodically and when requested by a node sending a…

rage 0.4.0

Rage is a video and audio player written with Enlightenment Foundation Libraries with some extra bells and whistles. …

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