Packages — R (Page 17 of 51)

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r-spatstat-data 2.1-0

This package contains all the datasets for the `spatstat' package. …

r-spatstat-geom 2.2-2

This is a subset of the original spatstat package, containing the user-level code from spatstat which performs geometrical operations, except for the geometry of linear networks. …

r-spatstat-linnet 2.3-0

This is a subset of the spatstat package, containing its functionality for spatial data on a linear network. …

r-spatstat-sparse 2.0-0

This package defines sparse three-dimensional arrays and supports standard operations on them. The package also includes utility functions for matrix calculations that are common in statistics, such as quadratic forms. …

r-spatstat-utils 2.2-0

This package contains utility functions for the `spatstat' package which may also be useful for other purposes. …

r-spdata 0.3.10

This a package containing diverse spatial datasets for demonstrating, benchmarking and teaching spatial data analysis. It includes R data of class `sf', `Spatial', and `nb'. It also contains data stored…

r-spdep 1.1-11

This package provides a collection of functions to create spatial weights matrix objects from polygon contiguities, from point patterns by distance and tessellations, for summarizing these objects, and for permitting their use…

r-spectre 0.5.5-1.f6648ab

This package provides a computational toolkit in R for the integration, exploration, and analysis of high-dimensional single-cell cytometry and imaging data. …

r-spectrum 1.1

This package provides a self-tuning spectral clustering method for single or multi-view data. Spectrum uses a new type of adaptive density aware kernel that strengthens connections in the graph based on…

r-speedglm 0.3-3

This package provides tools for fitting linear models and generalized linear models to large data sets by updating algorithms. …

r-spelling 2.2

This is an R package for spell checking common document formats including LaTeX, markdown, manual pages, and DESCRIPTION files. It includes utilities to automate checking of documentation and vignettes as a…

r-splitstackshape 1.4.8

Online data collection tools like Google Forms often export multiple-response questions with data concatenated in cells. The `concat.split' (cSplit) family of functions provided by this package splits such data into separate…

r-splus2r 1.3-3

Currently there are many functions in S-PLUS that are missing in R. To facilitate the conversion of S-PLUS packages to R packages, this package provides some missing S-PLUS functionality in R. …

r-spp 1.16.0

This package provides tools for analysis of ChIP-seq and other functional sequencing data. …

r-sqldf 0.4-11

The `sqldf' function is typically passed a single argument which is an SQL select statement where the table names are ordinary R data frame names. `sqldf' transparently sets up a database,…

r-squarem 2021.1

This package provides algorithms for accelerating the convergence of slow, monotone sequences from smooth, contraction mapping such as the EM algorithm. It can be used to accelerate any smooth, linearly convergent…

r-stabledist 0.7-1

This package provides density, probability and quantile functions, and random number generation for (skew) stable distributions, using the parametrizations of Nolan. …

r-stabs 0.6-4

This package provides resampling procedures to assess the stability of selected variables with additional finite sample error control for high-dimensional variable selection procedures such as Lasso or boosting. Both, standard stability selection…

r-stam 0.0-1

This package provides various methods to conduct Spatio-Temporal Analysis and Modelling, including Exploratory Spatio-Temporal Analysis and Inferred Spatio-Temporal Modelling. …

r-stanheaders 2.21.0-7

The C++ header files of the Stan project are provided by this package. There is a shared object containing part of the `CVODES' library, but it is not accessible from R.…

r-stars 0.5-3

Reading, manipulating, writing and plotting spatiotemporal arrays (raster and vector data cubes) in `R', using `GDAL' bindings provided by `sf', and `NetCDF' bindings by `ncmeta' and `RNetCDF'. …

r-statcheck 1.3.0

This package can automatically extract statistical null-hypothesis significant testing (NHST) results from articles and recompute the p-values based on the reported test statistic and degrees of freedom to detect possible inconsistencies. …

r-statmod 1.4.36

This package provides a collection of algorithms and functions to aid statistical modeling. It includes growth curve comparisons, limiting dilution analysis (aka ELDA), mixed linear models, heteroscedastic regression, inverse-Gaussian probability calculations, Gauss…

r-statnet-common 4.5.0

This package provides non-statistical utilities used by the software developed by the Statnet Project. …

r-stepwise 0.3

This package provides a stepwise approach to identifying recombination breakpoints in a genomic sequence alignment. …

r-stm 1.3.6

The "Structural Topic Model" (STM) allows researchers to estimate topic models with document-level covariates. The package also includes tools for model selection, visualization, and estimation of topic-covariate regressions. …

r-stopwords 2.2

This package provides multiple sources of stopwords, for use in text analysis and natural language processing. …

r-streamr 0.4.5

This package provides functions to access Twitter's filter, sample, and user streams, and to parse the output into data frames. …

r-stringdist 0.9.8

This package implements an approximate string matching version of R's native `match' function. It can calculate various string distances based on edits (Damerau-Levenshtein, Hamming, Levenshtein, optimal string alignment), qgrams (q- gram, cosine,…

r-stringfish 0.15.2

This package provides an extendable, performant and multithreaded `alt-string' implementation backed by C++ vectors and strings. …

r-stringi 1.7.4

This package allows for fast, correct, consistent, portable, as well as convenient character string/text processing in every locale and any native encoding. Owing to the use of the ICU library, the…

r-stringr 1.4.0

Stringr is a consistent, simple and easy to use set of wrappers around the fantastic `stringi' package. All function and argument names (and positions) are consistent, all functions deal with "NA"'s…

r-striprtf 0.5.3

Extracts plain text from "Rich Text Format" (RTF) file. …

r-strucchange 1.5-2

This package provides tools for testing, monitoring and dating structural changes in (linear) regression models. It features tests/methods from the generalized fluctuation test framework as well as from the F test…

r-structuralvariantannotation 1.8.2

This package contains useful helper functions for dealing with structural variants in VCF format. The packages contains functions for parsing VCFs from a number of popular callers as well as functions…

r-styler 1.6.2

This is a package for pretty-printing R code without changing the user's formatting intent. …

r-subplex 1.6

This package implements the Subplex optimization algorithm. It solves unconstrained optimization problems using a simplex method on subspaces. The method is well suited for optimizing objective functions that are noisy…

r-summarizedexperiment 1.22.0

The SummarizedExperiment container contains one or more assays, each represented by a matrix-like object of numeric or other mode. The rows typically represent genomic ranges of interest and the columns represent…

r-summarytools 1.0.0

This package provides tools for data frame summaries, cross-tabulations, weight-enabled frequency tables and common univariate statistics in concise tables available in a variety of formats (plain ASCII, Markdown and HTML). A good…

r-superheat 0.1.0

This package provides a system for generating extendable and customizable heatmaps for exploring complex datasets, including big data and data with multiple data types. …

r-superlearner 2.0-28

This package implements the super learner prediction method and contains a library of prediction algorithms to be used in the super learner. …

r-suppdists 1.1-9.5

This package provides ten distributions supplementing those built into R. Inverse Gauss, Kruskal-Wallis, Kendall's Tau, Friedman's chi squared, Spearman's rho, maximum F ratio, the Pearson product moment correlation coefficient, Johnson distributions, normal scores…

r-survey 4.1-1

This package provides tools for the analysis of complex survey samples. The provided features include: summary statistics, two-sample tests, rank tests, generalised linear models, cumulative link models, Cox models, loglinear models, and…

r-survival 3.2-13

This package contains the core survival analysis routines, including definition of Surv objects, Kaplan-Meier and Aalen-Johansen (multi-state) curves, Cox models, and parametric accelerated failure time models. …

r-survivalroc 1.0.3

Compute time-dependent ROC curve from censored survival data using Kaplan-Meier (KM) or Nearest Neighbor Estimation (NNE) method of Heagerty, Lumley & Pepe (Biometrics, Vol 56 No 2, 2000, PP 337-344) …

r-survminer 0.4.9

This package contains the function `ggsurvplot()' for easily drawing beautiful and 'ready-to-publish' survival curves with the 'number at risk' table and 'censoring count plot'. Other functions are also available to plot…

r-survmisc 0.5.5

This package provides a collection of functions to help in the analysis of right-censored survival data. These extend the methods available in the `survival' package. …

r-sushi 1.30.0

This package provides flexible, quantitative, and integrative genomic visualizations for publication-quality multi-panel figures. …

r-sva 3.40.0

This package contains functions for removing batch effects and other unwanted variation in high-throughput experiment. It also contains functions for identifying and building surrogate variables for high-dimensional data sets. Surrogate variables are…

r-svdialogs 1.0.3

This package helps to construct standard dialog boxes for your GUI, including message boxes, input boxes, list, file or directory selection, and others. In case R cannot display GUI dialog boxes,…

r-svglite 2.0.0

`svglite' is a graphics device that produces clean "SVG" (Scalable Vector Graphics) output, suitable for use on the web, or hand editing. Compared to the built-in `svg()', `svglite' is considerably faster,…

r-svgui 1.0.1

The SciViews `svGUI' package eases the management of Graphical User Interfaces (GUI) in R. It is independent from any particular GUI widgets. It centralizes info about GUI elements currently used,…

r-svmisc 1.1.4

This package provides miscellaneous functions for SciViews or general use, including tools to manage a temporary environment attached to the search path for temporary variables you do not want to `save()' or…

r-synchronicity 1.3.5

This package provides support for synchronization via mutexes and may eventually support interprocess communication and message passing. …

r-sys 3.4

This package provides drop-in replacements for the base `system2()' function with fine control and consistent behavior across platforms. It supports clean interruption, timeout, background tasks, and streaming STDIN / STDOUT /…

r-sysfonts 0.8.5

This is a package to simplify loading of system fonts and Google Fonts into R, in order to support other packages. …

r-systemfonts 1.0.2

This package provides system native access to the font catalogue. As font handling varies between systems it is difficult to correctly locate installed fonts across different operating systems. The 'systemfonts'…

r-systempiper 1.26.3

This R package provides tools for building and running automated end-to-end analysis workflows for a wide range of "next generation sequence" (NGS) applications such as RNA-Seq, ChIP-Seq, VAR-Seq and Ribo-Seq. Important features…

r-syuzhet 1.0.6

Extracts sentiment and sentiment-derived plot arcs from text using a variety of sentiment dictionaries conveniently packaged for consumption by R users. Implemented dictionaries include "syuzhet" (default) developed in the Nebraska Literary Lab, "afinn"…

r-tab 5.1.1

This package contains functions for creating various types of summary tables, e.g. comparing characteristics across levels of a categorical variable and summarizing fitted generalized linear models, generalized estimating equations, and Cox proportional…

r-tablerdash 0.1.0

This package provides an R interface to the Tabler (https://tabler.io) HTML template. tablerDash is a light Bootstrap 4 dashboard template. There are different layouts available such as a one page…

r-tam 3.7-16

This package includes tools for marginal maximum likelihood estimation and joint maximum likelihood estimation for unidimensional and multidimensional item response models. The package functionality covers the Rasch model, 2PL model, 3PL model,…

r-tcltk2 1.2-11

This package provides a series of additional Tcl commands and Tk widgets with style and various functions to supplement the tcltk package …

r-tclust 1.4-2

This package implements different robust clustering algorithms (`tclust') based on trimming and including some graphical diagnostic tools (`ctlcurves' and `DiscrFact'). …

r-tdthap 1.1-11

Functions and examples are provided for transmission/disequilibrium tests for extended marker haplotypes, as in Clayton, D. and Jones, H. (1999) "Transmission/disequilibrium tests for extended marker haplotypes". …

r-tea 1.1

This package provides different approaches for selecting the threshold in generalized Pareto distributions. Most of them are based on minimizing the AMSE-criterion or at least by reducing the bias of the…

r-tensor 1.5

The tensor product of two arrays is notionally an outer product of the arrays collapsed in specific extents by summing along the appropriate diagonals. This package allows you to compute the…

r-tensora 0.36.2

This package provides convenience functions for advanced linear algebra with tensors and computation with datasets of tensors on a higher level abstraction. It includes Einstein and Riemann summing conventions, dragging, co- and contravariate…

r-tensorflow 2.6.0

R interface to TensorFlow a library for numerical computation using data flow graphs. Nodes in the graph represent mathematical operations, while the graph edges represent the multidimensional data arrays (tensors) communicated…

r-terra 1.3-22

This package provides methods for spatial data analysis, especially raster data. The included methods allow for low-level data manipulation as well as high-level global, local, zonal, and focal computation. The predict…

r-testthat 3.0.4

This package provides a unit testing system for R designed to be fun, flexible and easy to set up. …

r-text2vec 0.6

This package provides fast and memory-friendly tools for text vectorization, topic modeling (LDA, LSA), word embeddings (GloVe), similarities. It provides a source-agnostic streaming API, which allows researchers to perform analysis of collections…

r-textclean 0.9.3

Tools to clean and process text. Tools are geared at checking for substrings that are not optimal for analysis and replacing or removing them (normalizing) with more analysis friendly substrings (see…

r-textplot 0.2.0

Visualise complex relations in texts. This is done by providing functionalities for displaying text co-occurrence networks, text correlation networks, dependency relationships as well as text clustering. Feel free to join…

r-textshape 1.7.3

Tools that can be used to reshape and restructure text data. …

r-textshaping 0.3.5

This package provides access to the text shaping functionality in the HarfBuzz library and the bidirectional algorithm in the Fribidi library. This is a low-level utility package mainly for graphic devices…

r-tfautograph 0.3.2

This package lets you translate R control flow expressions into Tensorflow graphs. …

r-tfbstools 1.30.0

TFBSTools is a package for the analysis and manipulation of transcription factor binding sites. It includes matrices conversion between "Position Frequency Matrix" (PFM), "Position Weight Matrix" (PWM) and "Information Content Matrix" (ICM).…

r-tfisher 0.2.0

This package provides the "cumulative distribution function" (CDF), quantile, and statistical power calculator for a collection of thresholding Fisher's p-value combination methods, including Fisher's p-value combination method, truncated product method and, in particular,…

r-tfmpvalue 0.0.8

In putative "Transcription Factor Binding Sites" (TFBSs) identification from sequence/alignments, we are interested in the significance of certain match scores. TFMPvalue provides the accurate calculation of a p-value with a score threshold…

r-tfruns 1.5.0

Create and manage unique directories for each TensorFlow training run. This package provides a unique, time stamped directory for each run along with functions to retrieve the directory of the latest…

r-tgconfig 0.0.0.9000-1.1e02c76

The goal of tgconfig is to provide infrastructure for managing package parameters. …

r-tgstat 1.0.2-1.4f8e60c

The goal of tgstat is to provide fast and efficient statistical tools. …

r-th-data 1.0-10

This package contains supporting data sets that are used in other packages maintained by Torsten Hothorn. …

r-threejs 0.3.3

Create interactive 3D scatter plots, network plots, and globes in R using the three.js visualization library. …

r-tibble 3.1.4

This package provides a `tbl_df' class that offers better checking and printing capabilities than traditional data frames. …

r-tidygraph 1.2.0

This package provides a graph implementation that can be thought of as two tidy data frames describing node and edge data respectively. It provides an approach to manipulate these two virtual…

r-tidymodels 0.1.3

The tidy modeling "verse" is a collection of packages for modeling and statistical analysis that share the underlying design philosophy, grammar, and data structures of the tidyverse. …

r-tidyposterior 0.1.0

This package can be used to conduct post hoc analyses of resampling results generated by models. For example, if two models are evaluated with the "root mean squared error" (RMSE) using…

r-tidypredict 0.4.8

This package parses a fitted R model object, and returns a formula in Tidy Eval code that calculates the predictions. It works with several database backends because it leverages `dplyr' and…

r-tidyr 1.1.3

tidyr is a reframing of the reshape2 package designed to accompany the tidy data framework, and to work hand-in-hand with magrittr and dplyr to build a solid pipeline for data analysis. …

r-tidyselect 1.1.1

This package provides a backend for the selecting functions of the tidyverse. It makes it easy to implement select-like functions in your own packages in a way that is consistent with…

r-tidytext 0.3.1

This is a package for text mining for word processing and sentiment analysis using `dplyr', `ggplot2', and other Tidy tools. …

r-tidytree 0.3.5

Phylogenetic trees generally contain multiple components including nodes, edges, branches and associated data. This package provides an approach to convert tree objects to tidy data frames. It also provides tidy…

r-tidyverse 1.3.1

The `tidyverse' is a set of packages that work in harmony because they share common data representations and API design. This package is designed to make it easy to install and…

r-tiff 0.1-8

This package provides an easy and simple way to read, write and display bitmap images stored in the TIFF format. It can read and write both files and in-memory raw vectors. …

r-timedate 3043.102

This package provides an environment for teaching "Financial Engineering and Computational Finance" and for managing chronological and calendar objects. …

r-timeseriesexperiment 1.10.1

This package is a visualization and analysis toolbox for short time course data which includes dimensionality reduction, clustering, two-sample differential expression testing and gene ranking techniques. The package also provides methods for…

r-tinytest 1.3.1

This package provides a lightweight unit testing framework. Main features: 1. install tests with the package; 2. test results are treated as data that can be stored…

r-tinytex 0.33

This package provides helper functions to install and maintain the LaTeX distribution named TinyTeX, a lightweight, cross-platform, portable, and easy-to-maintain version of TeX Live. This package also contains helper functions to compile…

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