pigx 0.0.3 Analysis pipelines for genomics

PiGx is a collection of genomics pipelines. It includes the following pipelines:

  • PiGx BSseq for raw fastq read data of bisulfite experiments

  • PiGx RNAseq for RNAseq samples

  • PiGx scRNAseq for single cell dropseq analysis

  • PiGx ChIPseq for reads from ChIPseq experiments

All pipelines are easily configured with a simple sample sheet and a descriptive settings file. The result is a set of comprehensive, interactive HTML reports with interesting findings about your samples.