gffcompare 0.10.15-1.be56ef4 Tool for comparing or classifing transcripts of RNA-Seq
gffcompare is a tool that can:
compare and evaluate the accuracy of RNA-Seq transcript assemblers (Cufflinks, Stringtie);
collapse (merge) duplicate transcripts from multiple GTF/GFF3 files (e.g. resulted from assembly of different samples);
classify transcripts from one or multiple GTF/GFF3 files as they relate to reference transcripts provided in a annotation file (also in GTF/GFF3 format).